APLOT INTERFACE

Aplot is a program for the visual comparison of two genomic sequences. Its
results can be used to facilitate gene prediction and for the graphical
representation of the alignment of the complex genomic sequences.
You can see an example of the aplot output here  

            


first species name: second species name:



INPUT ALIGNMENT (GFF OR SIM FORMAT)

INPUT ANNOTATION FOR THE FIRST SEQUENCE (GFF OR TAB FORMAT)

INPUT ANNOTATION FOR THE SECOND SEQUENCE (GFF OR TAB FORMAT)

plot colors:
Background color
 Foreground color
 Stripe color
plot elements to show:
 grid  stripes  lines  pip box
sequence elements to show;
 intron  exon  cds  gene
 altexon  utr  3'-utr  5'-utr
 gap  est  3'-est  5'-est
 cpg  sine  line  repeat
zoom portions of the plot:
 magnify
 highlight



The aplot program was written by Josep Abril
from City's Institute for Medical Research in Barcelona, Spain

The interface to aplot program was written by: Vadim Goremykin
from Department of Genome Analysis of Institute of Molecular Biotechnology in Jena, Germany
©:2000