Software

 

	KILAPE (K-masking and Iterative Local Assembly of Paired Ends): Automated scaffolding and gap filling of /de novo/ genome assemblies. KILAPE is fast, highly scalable, and can be implemented for large and complex genomes on modest hardware. Request software license via Email here. Last update: Dec. 2012.
	roche454ace2caf and consed2gap are some tools to convert assemblies from foreign packages (consed with ACE files) to CAF suiteable for the Staden package. Last update: Sept 2009.
	GenALA is a toolkit facilitating prokaryotic genome projects by linking GAP4 assembly and GenColors annotation. For more information or getting an academic license call us or send email. Last update: Febr 2006.
	Gap_merger v0.9 suggests walking primers and/or PCR primers for gap closure in GAP4 assembly projects. For more information or getting an academic license call us or send email. Last update: Febr 2007.
	kPerl a Sequence Analysis Utility Package. Last update: Nov 2018.
	MethTools a toolbox to visualize and analyze DNA methylation data Downloads available there .
	tuple_plot - a dot plot tool with stochastical background suppression. Current version v1.1.1 (2008-12-08). Download source as *.zip or *.tgz.