Software

 

	KILAPE (K-masking and Iterative Local Assembly of Paired Ends): Automated scaffolding and gap filling of /de novo/ genome assemblies. KILAPE is fast, highly scalable, and can be implemented for large and complex genomes on modest hardware. For more information or getting an academic license call us or send email . Last update: Febr. 2012.
	roche454ace2caf and consed2gap are some tools to convert assemblies from foreign packages (consed with ACE files) to CAF suiteable for the Staden package. Last update: Sept 2009.
	GenALA is a toolkit facilitating prokaryotic genome projects by linking GAP4 assembly and GenColors annotation. For more information or getting an academic license call us or send email. Last update: Febr 2006.
	Gap_merger v0.9 suggests walking primers and/or PCR primers for gap closure in GAP4 assembly projects. For more information or getting an academic license call us or send email. Last update: Febr 2007.
	kPerl a Sequence Analysis Utility Package. Last update: Jul 2008.
	MatMate Program for reading a wconsensus output and find matching tfbs in transfac. For more information or getting an academic license call us or send email. Last update: Dec 2004.
	MethTools a toolbox to visualize and analyze DNA methylation data Downloads available there .
	tuple_plot - a dot plot tool with stochastical background suppression. Current version v1.1.1 (2008-12-08). Download source as *.zip or *.tgz.
	Aplot is a program for the visual comparison of two genomic sequences. For more information or getting an academic license call us or send email. Last update: year 1999.
	Last update: February 06, 2012.